Lab Publications

Profiles and Summary

Latest Preprints

91) Hunter N.B. Moseley, Philippe Rocca-Serra, Reza M. Salek, Masanori Arita, and Emma L. Schymanski. "InChI Isotopologue and Isotopomer Specifications" Research Square rs.3.rs-3727054 (2023).

90) Robert M Flight, Praneeth S Bhatt, and Hunter N.B. Moseley. "Information-Content-Informed Kendall-tau Correlation: Utilizing Missing Values" bioRxiv 2022.02.24.481854 (2022).

Publications and Preprints

89) Erik D. Huckvale and Hunter N.B. Moseley. "A cautionary tale about properly vetting datasets used in supervised learning predicting metabolic pathway involvement" PLOS One (accepted).
89b) Erik D. Huckvale and Hunter N.B. Moseley. "A cautionary tale about properly vetting datasets used in supervised learning predicting metabolic pathway involvement" bioRxiv 2023.10.03.560711 (2023).

88) Jing Li, Liping Yang, Jun Song, Baoxiang Yan, Andrew J. Morris, Hunter N.B. Moseley, Robert M. Flight, Chi Wang, Jinpeng Liu, Heidi L. Weiss, Edward F. Morris, Ilyes Abdelhamid, Mathias J. Gerl, Olle Melander, Susan Smyth, B. Mark Evers. "Neurotensin accelerates atherosclerosis and increases circulating levels of short-chain and saturated triglycerides" Atherosclerosis (in press).

87) Hunter N.B. Moseley. "In the AI science boom, beware: your results are only as good as your data — Machine-learning systems are voracious data consumers — but trustworthy results require more vetting both before and after publication" Nature Feb 1 (2024).

86) Huan Jin and Hunter N.B. Moseley. "md_harmonize: a Python package for atom-level harmonization of public metabolic databases" Metabolites 13, 1199 (2023).
86b) Huan Jin and Hunter N.B. Moseley. "md_harmonize: a Python package for atom-level harmonization of public metabolic databases" bioRxiv 2022.12.08.519680 (2022).

85) Alan Luo and Hunter N.B. Moseley. "Electron Density Discrepancy Analysis of Energy Metabolism Coenzymes" International Journal of Bioengineering and Life Sciences 17, 307 (2023).

84) Erik D. Huckvale, Christian D. Powell, Huan Jin, and Hunter N.B. Moseley. "Benchmark dataset for training machine learning models to predict the pathway involvement of metabolites" Metabolites 13, 1120 (2023).
84b) Erik D. Huckvale, Christian D. Powell, Huan Jin, and Hunter N.B. Moseley. "Benchmark dataset for training machine learning models to predict the pathway involvement of metabolites" bioRxiv 2023.10.03.560715.

83) Christian D. Powell and Hunter N.B. Moseley. "The Metabolomics Workbench File Status Website: A Metadata Repository Promoting FAIR Principles of Metabolomics Data" BMC Bioinformatics 24, 299 (2023).
83b) Christian D. Powell and Hunter N.B. Moseley. "The Metabolomics Workbench File Status Website: A Metadata Repository Promoting FAIR Principles of Metabolomics Data" bioRxiv 2022.03.04.483070 (2022).

82) P. Travis Thompson and Hunter N.B. Moseley. "MESSES: Software for Transforming Messy Research Datasets into Clean Submissions to Metabolomics Workbench for Public Sharing" Metabolites 13, 842 (2023).
82b) P. Travis Thompson and Hunter N.B. Moseley. "MESSES: Software for Transforming Messy Research Datasets into Clean Submissions to Metabolomics Workbench for Public Sharing" bioRxiv 2023.05.27.542578 (2023).

81) Rance Nault, Matthew C. Cave, Gabriele Ludewig, Hunter N.B. Moseley, Kelly G. Pennell, and Tim Zacharewski. "A case for accelerating standards to achieve the FAIR principles of environmental health research experimental data" Environmental Health Perspectives 131, 6 (2023).

80) P. Travis Thompson, Sweta Ojha, Christian D. Powell, Kelly G. Pennell, and Hunter N.B. Moseley. "A proposed FAIR approach for disseminating geospatial information system maps" Scientific Data 10, 389 (2023).
80b) Sweta Ojha, P. Travis Thompson, Christian D. Powell, Hunter N.B. Moseley, and Kelly G. Pennell. "A FAIR approach for detecting and sharing PFAS hot-spot areas and water systems" chemRxiv 2022-bt3f6 (2022).

79) Sweta Ojha, P. Travis Thompson, Christian D. Powell, Hunter N.B. Moseley, and Kelly G. Pennell. "Identifying and sharing per-and polyfluoroalkyl substances hot-spot areas & exposures in drinking water" Scientific Data 10, 388 (2023).
79b) Sweta Ojha, P. Travis Thompson, Christian D. Powell, Hunter N.B. Moseley, and Kelly G. Pennell. "A FAIR approach for detecting and sharing PFAS hot-spot areas and water systems" chemRxiv 2022-bt3f6 (2022).

78) Erik Huckvale and Hunter N.B. Moseley. "kegg_pull: a Software Package for the RESTful Access and Pulling from The Kyoto Encyclopedia of Gene and Genomes" BMC Bioinformatics 24, 78 (2023).
78b) Erik Huckvale and Hunter N.B. Moseley. "kegg_pull: a Software Package for the RESTful Access and Pulling from The Kyoto Encyclopedia of Gene and Genomes" bioRxiv 2022.11.03.515120 (2022).

77) Zachary A. Kipp, Genesee J. Martinez, Evelyn A. Bates, Agil B. Maharramov, Robert M. Flight, Hunter N.B. Moseley, Andrew J. Morris, David E. Stec, Terry D. Hinds. "Bilirubin nanoparticle treatment in obese mice inhibits hepatic ceramide production and remodels liver fat content." Metabolites 13, 215 (2023).

76) Fan Chen, Aria L. Byrd, Jinpeng Liu, Robert M. Flight, Tanner J. DuCote, Kassandra J. Naughton, Xiulong Song, Abigail R. Edgin, Alexsandr Lukyanchuk, Danielle T. Dixon, Christian M. Gosser, Dave-Preston Esoe, Rani D. Jayswal, Stuart H. Orkin, Hunter N.B. Moseley, Chi Wang, Christine Fillmore Brainson. "Polycomb Deficiency Drives a FOXP2-High Aggressive State Targetable by Epigenetic Inhibitors" Nature Communications 14, 336 (2023).

75) P. Travis Thompson, Christian D. Powell, and Hunter N.B. Moseley. "Academic Tracker: Software for Tracking and Reporting Publications Associated with Authors and Grants" PLOS One 17, e0277834 (2022).
75b) Patrick T. Thompson, Christian D. Powell, and Hunter N.B. Moseley. "Academic Tracker: Software for Tracking and Reporting Publications Associated with Authors and Grants" bioRxiv 2022.03.25.485860 (2022).

74) Robert M. Flight, Joshua M. Mitchell, and Hunter N.B. Moseley. "Scan-Centric, Frequency-Based Method for Characterizing Peaks from Direct Injection Fourier transform Mass Spectrometry Experiments" Metabolites 12, 515 (2022).
74b) Robert M. Flight, Joshua M. Mitchell, and Hunter N.B. Moseley. "Scan-Centric, Frequency-Based Method for Characterizing Peaks from Direct Injection Fourier transform Mass Spectrometry Experiments" bioRxiv 2022.04.14.488423 (2022).

73) Justin F. Creeden, Zachary A. Kipp, Mei Xu, Robert M. Flight, Hunter N.B. Moseley, Genesee J. Martinez, Wang-Hsin Lee, Khaled Alganem, Ali S. Imami, Megan R. McMullen, Sanjoy Roychowdhury, Atta M. Nawabi, Jennifer A. Hipp, Samir Softic, Steven A. Weinman, Robert McCullumsmith, Laura E. Nagy, and Terry D. Hinds, Jr. "Hepatic Kinome Atlas: An In-Depth Identification of Kinase Pathways in Liver Fibrosis of Humans and Rodents" Hepatology 76, 1376 (2022).

72) Joshua M. Mitchell, Robert M. Flight, and Hunter N.B. Moseley. "Untargeted lipidomics of non-small cell lung carcinoma demonstrates differentially abundant lipid classes in cancer vs non-cancer tissue" Metabolites 11, 740 (2021).
72b) Joshua M Mitchell, Robert M Flight, Andrew N Lane, Hunter N.B. Moseley. "Untargeted lipidomics of non-small cell lung carcinoma shows differentially abundant lipid classes in cancer vs non-cancer tissue" medRxiv 2021.03.16.21253733 (2021).

71) Fan Chen, Jinpeng Liu, Robert M. Flight, Abigail R. Edgin, Xiulong Song, Haikuo Zhang, Kwok-Kin Wong, Hunter N.B. Moseley, Chi Wang, Christine F. Brainson. "Cellular Origins of EGFR-driven Lung Cancer Cells Determines Sensitivity to Therapy" Advanced Science 2101999 (2021).

70) Huan Jin and Hunter N.B. Moseley. "Hierarchical Harmonization of Atom-Resolved Metabolic Reactions Across Metabolic Databases" Metabolites 11, 431 (2021).
70b) Huan Jin and Hunter N.B. Moseley. "Hierarchical Harmonization of Atom-Resolved Metabolic Reactions Across Metabolic Databases" bioRxiv 2021.06.01.446673 (2021).

69) Pan Deng, Taylor Valentino, Michael Flythe, Hunter N.B. Moseley, Jacqueline Leachman, Andrew Morris, and Bernhard Hennig. "Untargeted stable-isotope probing of the gut microbiota metabolome using 13C-labeled dietary fibers" Journal of Proteome Research 20, 2904 (2021).

68) Christian D. Powell and Hunter N.B. Moseley. "The mwtab Python library for RESTful Access and Enhanced Quality Control, Deposition, and Curation of the Metabolomics Workbench Data Repository" Metabolites 11, 163 (2021).

67) Sisheng Liu, Jinpeng Liu, Yanqi Xie, Tingting Zhai, Eugene Hinderer, Arnold J. Stromberg, Nathan L. Vanderford, Jill M. Kolesar, Hunter N.B. Moseley, Li Chen, Chunming Liu, and Chi Wang. "MEScan: A Powerful Statistical Framework for Genome-Scale Mutual Exclusivity Analysis of Cancer Mutations" Bioinformatics 37, 1189 (2020).

66) Huan Jin, Joshua M. Mitchell, and Hunter N.B. Moseley. "Atom Identifiers Generated by a Neighborhood-Specific Graph Coloring Method Enable Compound Harmonization Across Metabolic Databases" Metabolites 10, 368 (2020).
66b) Huan Jin, Joshua M. Mitchell, and Hunter N.B. Moseley. "Atom Identifiers Generated by a Graph Coloring Method Enable Compound Harmonization Across Metabolic Databases" bioRxiv preprint 2020.06.19.161877 (2020).

65) Hunter N.B. Moseley. "Current Evidence Supporting the Use of Orally Administered Zinc in the Treatment of COVID-19" OSF Preprints April 12. osf.io/z8wvq (2020).

64) Yu Zhong, Kabhilan Mohan, Jinpeng Liu, Ahmad Al-Attar, Penghui Lin, Robert M. Flight, Qiushi Sun, Marc O. Warmoes, Rahul R. Deshpande, Huijuan Liu, Kyung Sik Jung, Mihail I. Mitov, Nianwei Lin, David A. Butterfield, Shuyan Lu, Jinze Liu, Hunter N. B. Moseley, Teresa W. Fan, Mark E. Kleinman, and Qingjun Wang. "Loss of CLN3, the gene mutated in juvenile neuronal ceroid lipofuscinosis, leads to metabolic impairment and autophagy induction in retina pigment epithelium" Biochimica et Biophysica Acta - Molecular Basis of Disease 165883 (2020).

63) Hunter N.B. Moseley. "Statistical Methods for Biologists" in Bioinformatics: A Practical Guide to the Analysis of Genes and Proteins 4th Edition, editors: Andreas D. Baxevanis, Gary D. Bader, and David S. Wishart, John Wiley & Sons: New Jersey (2020).

62) Rashmie Abeysinghe, Eugene W. Hinderer III, Hunter N.B. Moseley, and Licong Cui. "SSIF:Subsumption-based Sub-term Inference Framework to Audit Gene Ontology" Bioinformatics 36, 3207 (2020).

61) Christian D Powell, Daniel C Kirchhoff, Jason E DeRouchey, and Hunter N.B. Moseley. "Entropy-Based Analysis of Vertebrate Sperm Protamine Sequences: Evidence of Potential Dityrosine and Cysteine-Tyrosine Cross-Linking in Sperm Protamines" BMC Genomics 21, 277 (2020).
61b) Christian D Powell, Daniel C Kirchhoff, Jason E DeRouchey, and Hunter N.B. Moseley. "Entropy-Based Analysis of Vertebrate Sperm Protamine Sequences: Evidence of Dityrosine and Cysteine-Tyrosine Cross-Linking in Sperm Protamines" bioRxiv preprint 845180 (2019).

60) Huan Jin and Hunter N.B. Moseley. "Robust Moiety Model Selection Using Mass Spectrometry Measured Isotopologues" Metabolites 10, 118 (2020).
60b) Huan Jin and Hunter N.B. Moseley. "Robust Moiety Model Selection Using Mass Spectrometry Measured Isotopologues" bioRxiv preprint 839241 (2019).

59) Joshua M. Mitchell, Robert M. Flight, and Hunter N.B. Moseley. "Deriving Accurate Lipid Classification based on Molecular Formula" Metabolites 10, 122 (2020).
59b) Joshua M. Mitchell and Hunter N.B. Moseley. "Deriving Accurate Lipid Classification based on Molecular Formula" bioRxiv preprint 572883 (2019).

58) Eugene W. Hinderer III and Hunter N.B. Moseley. "GOcats: A tool for categorizing Gene Ontology into subgraphs of user-defined concepts" PLOS One 15, e0233311 (2020).
58b) Eugene W. Hinderer III and Hunter N.B. Moseley. "GOcats: A tool for categorizing Gene Ontology into subgraphs of user-defined concepts" bioRxiv preprint 306936 (2018).

57) Sen Yao and Hunter N.B. Moseley. "A chemical interpretation of protein electron density maps in the worldwide protein data bank" PLOS One 15, e0236894 (2020).
57b) Sen Yao and Hunter N.B. Moseley. "A chemical interpretation of protein electron density maps in the worldwide protein data bank" bioRxiv preprint 613109 (2019).

56) Joshua M. Mitchell, Robert M. Flight, and Hunter N.B. Moseley. "Small Molecule Isotope Resolved Formula Enumeration: a Methodology for Assigning Isotopologues and Metabolites in Fourier Transform Mass Spectra" Analytical Chemistry 91, 8933 (2019).
56b) Joshua M. Mitchell, Robert M. Flight, and Hunter N.B. Moseley. "Small Molecule Isotope Resolved Formula Enumeration: a Methodology for Assigning Isotopologues and Metabolites in Fourier Transform Mass Spectra" chemRxiv preprint 7609205 (2019).

55) Sen Yao and Hunter N.B. Moseley. "Finding high-quality metal ion-centric regions across the worldwide Protein Data Bank" Molecules 24, 3179 (2019).
55b) Sen Yao and Hunter N.B. Moseley. "Finding high-quality metal ion-centric regions across the worldwide Protein Data Bank" bioRxiv preprint 619809 (2019)

54) Huan Jin and Hunter N.B. Moseley. "Moiety Modeling Framework for Deriving Moiety Abundances from Mass Spectrometry Measured Isotopologues" BMC Bioinformatics 20, 524 (2019).
54b) Huan Jin and Hunter N.B. Moseley. "Moiety Modeling Framework for Deriving Moiety Abundances from Mass Spectrometry Measured Isotopologues" bioRxiv preprint 595348 (2019).

53) Madeline Krentz Gober, Robert M. Flight, Joshua Lambert, Hunter N.B. Moseley, Arnold Stromberg, and Esther P. Black. "Deregulation of a network of mRNA and miRNA genes reveals that CK2 and MEK inhibitors may synergize to induce apoptosis KRAS-active NSCLC" Cancer Informatics 18, 1176935119843507 (2019).

52) Xi Chen, Andrey Smelter and Hunter N.B. Moseley.” BaMORC: A Software Package for Accurate and Robust 13C Reference Correction of Protein NMR Spectra” Natural Product Communications 14, 1934578X19849142 (2019).

51) Eugene W. Hinderer III, Robert M. Flight, Rashmi Dubey, James N. MacLeod, and Hunter N.B. Moseley. "Advances in Gene Ontology Utilization Improve Statistical Power of Annotation Enrichment" PLOS One 14, e0220728 (2019).
51b) Eugene W. Hinderer III, Robert M. Flight, Rashmi Dubey, James N. MacLeod, and Hunter N.B. Moseley. "Advances in Gene Ontology Utilization Improve Statistical Power of Annotation Enrichment" bioRxiv preprint 419085 (2018).

50) Rashmie Abeysinghe, Fengbo Zheng, Eugene W. Hinderer III, Hunter N.B. Moseley, and Licong Cui. "A Lexical Approach to Identifying Subtype Inconsistencies in Biomedical Terminologies" Quality Assurance of Biological and Biomedical Ontologies and Terminologies Workshop -- Bioinformatics and Biomedicine (BIBM), 2018 IEEE International Conference pp. 1982-1989 (2018).

49) Joshua M. Mitchell, Robert M. Flight, QingJun Wang, Richard M Higashi, Teresa W-M Fan, Andrew N. Lane, and Hunter N.B. Moseley. "New Methods to Identify High Peak Density Artifacts in Fourier Transform Mass Spectra and mitigate their Effects on High-Throughput Metabolomics Data Analysis" Metabolomics 14, 125 (2018).
49b) Joshua M. Mitchell, Robert M. Flight, QingJun Wang, Woo-Young Kang, Richard M Higashi, Teresa W-M Fan, Andrew N. Lane, and Hunter N.B. Moseley. "High Peak Density Artifacts in Fourier Transform Mass Spectra and their Effects on Data Analysis" bioRxiv preprint 191205 (2017).

48) Patrick J. Trainor, Joshua M. Mitchell, Samantha M. Carlisle, Hunter N.B. Moseley, Andrew P. DeFilippis, and Shesh N. Rai. "Inferring metabolite interactomes via molecular structure informed Bayesian graphical model selection with an application to coronary artery disease" bioRxiv preprint 386409 (2018).

47) Xi Chen, Andrey Smelter, and Hunter N.B. Moseley. "Automatic 13C Chemical Shift Reference Correction for Unassigned Protein NMR Spectra" J Biomol NMR 72,11 (2018).

46) Yekaterina Y. Zaytseva, Piotr G. Rychahou, Anh-Thu Le, Timothy L. Scott, Robert M. Flight, Ji Tae Kim, Jennifer Harris, Jinpeng Liu, Chi Wang, Andrew J. Morris, Sivakumaran Theru Arumugam, Teresa Fan, Hunter N.B. Moseley, Tianyan Gao, Eun Y. Lee, Heidi L. Weiss, Timothy S. Heuer, George Kemble, and B. Mark Evers. "Preclinical evaluation of novel fatty acid synthase inhibitors in primary colorectal cancer cells and a patient-derived xenograft model of colorectal cancer" Oncotarget 9, 24787 (2018).

45) Andrey Smelter and Hunter N.B. Moseley. "A Python library for FAIRer access and deposition to the Metabolomics Workbench Data Repository" Metabolomics 14, 64 (2018).

44) Jinpeng Liu, Thilakam Murali, Tianxin Yu, Chunming Liu, Theru A.Sivakumaran, Hunter N.B. Moseley, Igor B. Zhulin, Heidi L. Weiss, Eric B. Durbin, Sally R. Ellingson, Jinze Liu, Bin Huang, Brent J. Hallahan, Craig M. Horbinski, Kurt Hodges, Dana L. Napier, Thèrése Bocklage, Joseph Mueller, Nathan L. Vanderford, David W. Fardo, Chi Wang, and Susanne M. Arnold. "Characterization of Squamous Cell Lung Cancers from Appalachian Kentucky" Cancer Epidemiology, Biomarkers and Prevention 28, 348 (2018).

43) Rashmie Abeysinghe, Eugene W. Hinderer III, Hunter N.B. Moseley, and Licong Cui. "Auditing Subtype Inconsistencies among Gene Ontology Concepts" The 2nd International Workshop on Semantics-Powered Data Analytics (SEPDA 2017) -- Bioinformatics and Biomedicine (BIBM), 2017 IEEE International Conference 1242-1245 (2017).

42) Dries Verdegem, Hunter NB Moseley, Wesley Vermaelen, Abel Acosta Sanchez, and Bart Ghesquière. "MAIMS: A software tool for sensitive metabolic tracer analysis through the deconvolution of 13C mass isotopologue profiles of large composite metabolites" Metabolomics 13, 123 (2017).

41) Andrey Smelter, Eric C. Rouchka, and Hunter N.B. Moseley. "Detecting and accounting for multiple sources of positional variance in peak list registration analysis and spin system grouping" J Biomol NMR 68, 281 (2017).

40) Andrey Smelter, Morgan Astra, Hunter N.B. Moseley. "A Fast and Efficient Python Library for Interfacing with the Biological Magnetic Resonance Data Bank" BMC Bioinformatics 18, 175 (2017).

39) Stacy Webb, Tamas Nagy, Hunter N.B. Moseley, Michael Fried, Rebecca E. Dutch. "Hendra virus fusion protein transmembrane domain contributes to pre-fusion protein stability" Journal of Biological Chemistry 292, 5685 (2017).

38) Sen Yao, Robert M. Flight, Eric C. Rouchka, Hunter N.B. Moseley. "Perspectives and Expectations in Structural Bioinformatics of Metalloproteins" Proteins: Structure, Function, and Bioinformatics 85, 938 (2017).

37) Sen Yao, Robert M. Flight, Eric C. Rouchka, Hunter N.B. Moseley. "Aberrant coordination geometries discovered in the most abundant metalloproteins" Proteins: Structure, Function, and Bioinformatics 85, 885 (2017).
37b) Sen Yao, Robert M. Flight, Eric C. Rouchka, Hunter N.B. Moseley. "Cover Image of Volume 85, Issue 5" Proteins: Structure, Function, and Bioinformatics 85(5), cover (2017).

Yao_et_al-2017-Proteins-_Structure,_Function,_and_Bioinformatics_Cover.png
36) Narasimharao Nalabothula, Taha Al-jumaily, Robert M. Flight, Abdallah M. Eteleeb, Shao Xiaorong, Eric C. Rouchka, Hunter N.B. Moseley, and Yvonne Fondufe-Mittendorf. "Genome-wide profiling of PARP1 reveals an interplay with gene regulatory regions and DNA methylation" PLoS ONE 10, e0135410 (2015).

35) Sen Yao, Robert M. Flight, Eric C. Rouchka, and Hunter N.B. Moseley. "A less biased analysis of metalloproteins reveals novel zinc coordination geometries" Proteins: Structure, Function, and Bioinformatics 83, 1470 (2015).

34) Sen Yao, Robert M. Flight, Eric C. Rouchka, and Hunter N.B. Moseley. "A less biased analysis of metalloproteins reveals novel zinc coordination geometries" BCB '15 Proceedings of the 6th ACM Conference on Bioinformatics, Computational Biology and Health Informatics pp493-494 (2015).

33) Andrew N. Lane, Sengodagounder Arumugam, Pawel K. Lorkiewicz, Richard M. Higashi, Sébastien Laulhé, Michael H. Nantz, Hunter N.B. Moseley, and Teresa W.-M. Fan. "Chemoselective detection and discrimination of carbonyl-containing compounds in metabolite mixtures by 1H-detected 15N NMR" Magnetic Resonance in Chemistry, 53, 337 (2015).

32) Abdallah M. Eteleeb, Hunter N.B. Moseley, and Eric C. Rouchka. "A Comparison of Combined P-value Methods for Gene Differential Expression Using RNA-Seq Data" BCB'14: Proceedings of the 5th ACM Conference on Bioinformatics, Computational Biology and Health Informatics, pp417-425 (2014).

31) Joshua M. Mitchell, Teresa, W-M. Fan, Andrew N. Lane, Hunter N.B. Moseley. "Development and In silico Evaluation of Large-Scale Metabolite Identification Methods using Functional Group Detection for Metabolomics" Frontiers in Genetics - Systems Biology 5, 237 (2014).

30) Richard M. Higashi, Teresa W-M. Fan, Pawel K. Lorkiewicz, Hunter N.B. Moseley, Andrew N. Lane. "Stable Isotope Labeled Tracers for Metabolic Pathway Elucidation by GC-MS and FT-MS" Mass Spectrometry Methods in Metabolomics, vol 1198, 147, editor D. Raftery, Humana Press. (2014).

29) William J. Carreer, Robert M. Flight, and Hunter N.B. Moseley. "A computational framework for high-throughput isotopic natural abundance correction of omics-level ultra-high resolution FT-MS datasets" Metabolites, 3, 853-866 (2013).

28) Hunter N.B. Moseley. "Error Analysis and Propagation in Metabolomics Data Analysis" Comp Struct Biotech J, 4, e201301006 (2013).

27) Eric C. Rouchka, Robert M. Flight, and Hunter N.B. Moseley. "Proceedings of the Eleventh Annual UT-ORNL-KBRIN Bioinformatics Summit 2012" BMC Bioinformatics, 13, A1 (2012).

26) Teresa W-M. Fan, Pawel Lorkiewicz, Katherine Sellers, Hunter N.B. Moseley, Richard M. Higashi, and Andrew N. Lane. "Stable isotope-resolved metabolomics and applications to drug development" Pharmacology & Therapeutics, 133, 366 (2012).

25) Hunter N.B. Moseley, Andrew N. Lane, Alex C. Belshoff, Richard M. Higashi, and Teresa W-M. Fan. "A novel method for deconvoluting metabolic subunits from mass isotopologues in stable isotope resolved metabolomic experiments under non steady-state conditions: application to the biosynthesis of UDP-GlcNAc" BMC Biology, 9, 37 (2011).

24) Hunter N.B. Moseley, Richard M. Higashi, Teresa W-M. Fan, and Andrew N. Lane. "Metabolic Modeling of Converging Metabolic Pathways: Analysis of Non-Steady State Stable Isotope-Resolve Metabolism of UDP-GlcNAc and UDP-GalNAc" BIOINFORMATICS 2011 - Proceedings of the International Conference on Bioinformatics Models, Methods and Algorithms. Ed. Marco Pellegrini, Ana Fred, Joaquim Filipe, and Hugo Gamboa. SciTePress, Portugal, 108-115 (2011).

23) Hunter N.B. Moseley, Lindsay J. Sperling, and Chad M. Rienstra. "Automated Protein Resonance Assignments of Magic Angle Spinning Solid-State NMR Spectra of β1 Immunoglobulin Binding Domain of Protein G (GB1)" J Biomol NMR 48, 123-128 (2010).

22) Hunter N.B. Moseley. "Correcting for the Effects of Natural Abundance in Stable Isotope Resolved Metabolomics Experiments Involving Ultra-High Resolution Mass Spectrometry." BMC Bioinformatics 11, 139-144 (2010).

21) Andrew N. Lane, Teresa W-M. Fan, Zhengzhi Xie, Hunter N.B. Moseley, and Richard M. Higashi. "Isotopomer analysis of lipid biosynthesis by high resolution mass spectrometry and NMR." Anal. Chim. Acta. 651, 201-208 (2009).

20) Gregory J. Kornhaber, David Snyder, Hunter N.B. Moseley, and Gaetano T. Montelione. "Identification of Zinc-Ligated Cysteine Residues Based on 13Ca and 13Cb Chemical Shift Data." J Biomol NMR 34, 259-269 (2006).

19) Michael Baran, Hunter N.B. Moseley, James M. Aramini, Marvin J. Bayro, Daniel Monleon, Jessica Lau, and Gaetano T. Montelione. "SPINS: A Laboratory Information Management System for Organizing and Archiving Intermediate and Final Results from NMR Protein Structure Determinations." Proteins: Struct Funct Bioinformatics, 62,843-851 (2006).

18) Yuanpeng J. Huang, Hunter N.B. Moseley, Michael C. Baran, Cheryl Arrowsmith, Robert Powers, Roberto Tejero, Thomas Szyperski, and Gaetano T. Montelione. "An integrated platform for automated analysis of protein NMR structures." Meth Enzymology 394, 111-141 (2005).

17) Michael C. Baran, Janet Y. Huang, Hunter N.B. Moseley, and Gaetano T. Montelione. "Automated Analysis of Protein NMR Assignments and Structures." Chemical Reviews 104, 3541-3556 (2004).

16) Hunter N.B. Moseley, Nadeem Riaz, James M. Aramini, Thomas Szyperski, and Gaetano T. Montelione. "A Generalized Approach to Automated NMR Peak List Editing: Application to Reduced Dimensionality Triple Resonance Spectra." J Magn Reson 170, 263-277 (2004).

15) Hunter N.B. Moseley, Gurmukh Sahota, and Gaetano T. Montelione, "Assignment Validation Software Suite for the Evaluation and Presentation of Protein Resonance Assignment Data." J Biomol NMR 28, 341-355 (2004).

14) Deyou Zheng, Yuanpeng J. Huang, Hunter N.B. Moseley, Rong Xiao, James Aramini, G.V.T. Swapna, and Gaetano T. Montelione, "Automated protein fold determination using a minimal NMR constraint strategy." Protein Science 12, 1232-1246 (2003).

13) Michael Baran, Hunter N.B. Moseley, Gurmukh Sahota, and Gaetano T. Montelione, "SPINS: Standardized ProteIn NMR Storage. A data dictionary and object-oriented relational database for archiving protein NMR spectra." J Biomol NMR 24, 113-121 (2002).

12) Daniel Monleon, Kimberly Colson, Hunter N.B. Moseley, Clemens Anklin, Robert Oswald, Thomas A. Szyperski, and Gaetano T. Montelione, "Rapid Analysis of Protein Backbone Resonance Assignments Using Cryogenic Probes, Distributed Linux-based Computing, and Automated Spectral Analysis." J Struct Func Genomics 2, 93-101 (2002).

11) Thomas Szyperski, Deok C. Yeh, Dinesh K. Sukumaran, Hunter N.B. Moseley, and Gaetano T. Montelione. "Reduced-dimensionality NMR Spectroscopy for High-Throughput Protein Resonance Assignment." Proc Natl Acad Sci USA 99, 8009-8014 (2002).

10) Hunter N.B. Moseley, Daniel Monleon, and Gaetano T. Montelione, "Automatic Determination of Protein Backbone Resonance Assignments from Triple Resonance NMR Data." Meth Enzymology 339, 91 (2001).

9) Hunter N.B. Moseley and Gaetano T. Montelione. "Automated analysis of NMR assignments and structures for proteins." Curr Opin Struct Biol 9, 635-642 (1999).

8) N. Rama Krishna and Hunter N.B. Moseley. "Complete Relaxation and Conformational Exchange Matrix Analysis of NOESY Spectra of Reversibly Forming Ligand Receptor Complexes: Application to Transferred NOESY", in "Structure Computation and Dynamics in Protein NMR." Biological Mag Resonan Vol 17, editors: N. R. Krishna and L.J. Berliner, Plenum Press, New York (1999).

7) Hunter N.B. Moseley. "Implementation and Application of Complete Relaxation and Conformational Exchange Matrix Analysis of NOESY Spectra." dissertation (1998). ISBN: 978-0-599-04716-7.

6) Hunter N.B. Moseley, Weontae Lee, Cheryl H. Arrowsmith, and N. Rama Krishna. "Quantitative Determination of Conformational, Dynamic, and Kinetic Parameters of a Ligand Protein/DNA Complex from a CORCEMA Analysis of Intermolecular Transferred NOESY." Biochemistry 36, 5293 (1997).

5) Ernest V. Curto, Hunter N.B. Moseley, and N. Rama Krishna. "CORCEMA evaluation of the potential role of intermolecular transferred NOESY in the characterization of ligand receptor complexes." J Comp Aided Molec Design 10, 361 (1996).

4) Hunter N.B. Moseley, Ernest V. Curto, and N. Rama Krishna. "Complete Relaxation and Conformational Exchange Matrix (CORCEMA) Analysis of NOESY Spectra of Interacting Systems: Two dimensional Transferred NOESY." J Magn Reson B108, 243 (1995).

3) Patricia L. Jackson, Hunter N.B. Moseley, and N. Rama Krishna. "Relative Effects of Protein Mediated and Ligand Mediated Spin Diffusion Pathways on Transferred NOESY, and Implications on the Accuracy of the Bound Ligand Conformation." J Magn Reson B107, 289 (1995).

2) Curtis C. Maier, Hunter N.B. Moseley, Shan Ren Zhou, John N. Whitaker, and J. Edwin Blalock. "Identification of Interactive Determinants on Idiotypic Anti idiotypic Antibodies through Comparison of Their Hydropathic Profiles." Immunomethods 5, 107 (1994).

1) Rick L. Davies and Hunter N.B. Moseley. "Student Roots: Square root algorithm in Forth." Forth Dimensions 8(4), 8-9 (1987).
Topic revision: r174 - 29 Feb 2024, HunterMoseley
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